Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRP | rs487174 | chr1:46009536 | C/T | 8.78E-6 | 214 | 15.2 | 16.77 | 7.57 | KM Plot |
| KIRP | rs4883065 | chr12:8167854 | A/C | 0.000541 | 212 | 25.07 | 13.77 | 13.53 | KM Plot |
| KIRP | rs4883476 | chr12:8167855 | C/T | 0.000592 | 211 | 25.07 | 13.77 | 13.1 | KM Plot |
| KIRP | rs4901192 | chr14:52558762 | C/G | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs4901193 | chr14:52558902 | G/A | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs4901194 | chr14:52558936 | C/T | 3.26E-9 | 214 | 16.93 | 15.65 | 4.07 | KM Plot |
| KIRP | rs4928115 | chr3:99962929 | C/G | 1.6E-8 | 214 | 4.37 | 18.47 | 16.47 | KM Plot |
| KIRP | rs4928121 | chr3:99992343 | C/A | 2.19E-5 | 214 | 16.43 | 19.3 | 3.85 | KM Plot |
| KIRP | rs4928122 | chr3:100001162 | C/T | 4.42E-5 | 211 | 16.43 | 18.88 | 4.67 | KM Plot |
| KIRP | rs4928163 | chr3:99943675 | G/A | 4.06E-8 | 209 | 16.47 | 19.3 | 4.07 | KM Plot |
| KIRP | rs4928165 | chr3:99959992 | A/G | 9.44E-9 | 214 | 16.47 | 18.47 | 4.37 | KM Plot |
| KIRP | rs4928168 | chr3:100029173 | A/G | 4.46E-5 | 210 | 16.43 | 18.47 | 4.67 | KM Plot |
| KIRP | rs494628 | chr3:73306813 | C/A | 0.000554 | 210 | 12.52 | 18.47 | 13.73 | KM Plot |
| KIRP | rs4976639 | chr5:176550301 | A/C | 2.18E-7 | 214 | 9.77 | 17.6 | 15.33 | KM Plot |
| KIRP | rs4976682 | chr5:176726002 | A/G | 3.69E-7 | 214 | 0.1 | 19.27 | 15.33 | KM Plot |